Copper in PDB 8ytq: The Structure of Apocopc From Thioalkalivibrio Paradoxus

The structure of The Structure of Apocopc From Thioalkalivibrio Paradoxus, PDB code: 8ytq was solved by O.G.Kulikova, A.Y.Solovieva, L.A.Varfolomeeva, N.I.Dergousova, K.M.Boyko, T.V.Tikhonova, V.O.Popov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.35 / 1.70
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	28.084, 144.787, 55.35, 90, 90.07, 90
R / Rfree (%)	18.4 / 23.1

The binding sites of Copper atom in the The Structure of Apocopc From Thioalkalivibrio Paradoxus (pdb code 8ytq). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 3 binding sites of Copper where determined in the The Structure of Apocopc From Thioalkalivibrio Paradoxus, PDB code: 8ytq:
Jump to Copper binding site number: 1; 2; 3;

Copper binding site 1 out of 3 in the The Structure of Apocopc From Thioalkalivibrio Paradoxus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of The Structure of Apocopc From Thioalkalivibrio Paradoxus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:23.0 occ:0.30 ND1 A:HIS142 2.0 26.6 1.0 OD2 A:ASP140 2.0 34.5 1.0 CG A:ASP140 2.9 30.4 1.0 CG A:HIS142 2.9 29.3 1.0 CE1 A:HIS142 3.0 26.2 1.0 O A:HOH333 3.0 20.8 1.0 O A:HOH341 3.1 28.8 1.0 OD1 A:ASP140 3.2 25.9 1.0 CB A:HIS142 3.2 22.1 1.0 CD2 A:HIS142 4.0 28.9 1.0 NE2 A:HIS142 4.1 25.9 1.0 OE2 A:GLU58 4.2 32.0 0.5 CB A:ASP140 4.2 29.8 1.0 OE1 A:GLU58 4.3 25.0 0.5 N A:ALA32 4.4 20.2 1.0 CA A:HIS142 4.6 19.2 1.0 N A:HIS142 4.8 19.6 1.0 OE2 A:GLU58 5.0 25.8 0.5

Copper binding site 2 out of 3 in the The Structure of Apocopc From Thioalkalivibrio Paradoxus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of The Structure of Apocopc From Thioalkalivibrio Paradoxus within 5.0Å range: probe atom residue distance (Å) B Occ C:Cu202 b:23.9 occ:0.30 OD2 C:ASP140 2.0 29.4 1.0 ND1 C:HIS31 2.0 36.2 1.0 CG C:HIS31 2.8 37.5 1.0 CG C:ASP140 2.9 25.8 1.0 ND1 C:HIS142 3.0 33.6 1.0 CE1 C:HIS31 3.0 33.6 1.0 CB C:HIS31 3.1 36.8 1.0 CA C:HIS31 3.2 34.5 1.0 OD1 C:ASP140 3.2 23.8 1.0 CB C:HIS142 3.3 21.8 1.0 CG C:HIS142 3.4 26.5 1.0 N C:HIS31 3.9 31.9 1.0 CE1 C:HIS142 4.0 23.5 1.0 CD2 C:HIS31 4.0 38.5 1.0 NE2 C:HIS31 4.0 34.3 1.0 OE2 C:GLU58 4.1 35.6 1.0 CB C:ASP140 4.2 19.1 1.0 C C:HIS31 4.3 32.1 1.0 N C:ALA32 4.4 35.4 1.0 CD2 C:HIS142 4.5 29.3 1.0 CA C:HIS142 4.7 19.2 1.0 NE2 C:HIS142 4.8 29.0 1.0 N C:HIS142 4.8 21.6 1.0

Copper binding site 3 out of 3 in the The Structure of Apocopc From Thioalkalivibrio Paradoxus


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 3 of The Structure of Apocopc From Thioalkalivibrio Paradoxus within 5.0Å range: probe atom residue distance (Å) B Occ D:Cu202 b:21.2 occ:0.20 OD2 D:ASP140 2.0 35.6 1.0 ND1 D:HIS142 2.0 30.6 1.0 CG D:ASP140 2.9 27.2 1.0 CE1 D:HIS142 3.0 28.4 1.0 CG D:HIS142 3.0 26.3 1.0 OD1 D:ASP140 3.2 26.2 1.0 CB D:HIS142 3.3 22.2 1.0 N D:ALA32 4.0 27.4 1.0 NE2 D:HIS142 4.1 33.7 1.0 CD2 D:HIS142 4.1 27.1 1.0 CB D:ASP140 4.2 20.5 1.0 OE2 D:GLU58 4.4 33.2 1.0 CA D:HIS142 4.6 19.8 1.0 N D:HIS142 4.7 19.6 1.0

O.G.Kulikova, A.Y.Solovieva, L.A.Varfolomeeva, N.I.Dergousova, K.M.Boyko, T.V.Tikhonova, V.O.Popov. The Structure of Apocopc From Thioalkalivibrio Paradoxus To Be Published.