Copper in PDB 5wv4: X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant

The structure of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, PDB code: 5wv4 was solved by S.Tamaoki, T.Yamaguchi, T.Kohzuma, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.02 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	60.236, 93.857, 34.628, 90.00, 90.00, 90.00
R / Rfree (%)	18 / 24.2

The binding sites of Copper atom in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant (pdb code 5wv4). This binding sites where shown within 5.0 Angstroms radius around Copper atom.
In total 2 binding sites of Copper where determined in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant, PDB code: 5wv4:
Jump to Copper binding site number: 1; 2;

Copper binding site 1 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 1 of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cu201 b:16.8 occ:1.00 ND1 A:HIS40 2.1 16.1 1.0 SG A:CYS78 2.2 14.8 1.0 ND1 A:HIS81 2.2 17.1 1.0 SD A:MET86 2.6 16.0 1.0 CE1 A:HIS40 3.0 16.9 1.0 CB A:CYS78 3.1 14.0 1.0 CG A:HIS81 3.1 17.2 1.0 CG A:HIS40 3.1 16.3 1.0 CE1 A:HIS81 3.2 18.2 1.0 CE A:MET86 3.3 16.2 1.0 CB A:HIS81 3.3 16.8 1.0 CB A:HIS40 3.4 15.8 1.0 CA A:HIS40 3.6 15.8 1.0 CG A:MET86 3.9 15.4 1.0 O A:GLY39 4.1 17.8 1.0 NE2 A:HIS40 4.2 17.2 1.0 CD2 A:HIS81 4.2 17.8 1.0 CD2 A:HIS40 4.3 16.7 1.0 NE2 A:HIS81 4.3 18.1 1.0 O A:HOH404 4.4 35.6 1.0 CB A:MET86 4.5 15.4 1.0 N A:HIS81 4.5 16.2 1.0 CA A:CYS78 4.5 13.5 1.0 N A:HIS40 4.5 17.2 1.0 CG A:PRO80 4.5 16.1 1.0 CA A:HIS81 4.5 16.6 1.0 C A:GLY39 4.6 18.2 1.0 N A:ASN41 4.6 14.5 1.0 C A:HIS40 4.7 15.3 1.0

Copper binding site 2 out of 2 in the X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant


Mono view


Stereo pair view

A full contact list of Copper with other atoms in the Cu binding site number 2 of X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cu201 b:19.3 occ:1.00 ND1 B:HIS40 2.1 21.9 1.0 ND1 B:HIS81 2.2 19.6 1.0 SG B:CYS78 2.2 17.2 1.0 SD B:MET86 2.6 20.4 1.0 CE1 B:HIS40 3.1 22.1 1.0 CE1 B:HIS81 3.1 19.6 1.0 CG B:HIS81 3.1 19.6 1.0 CG B:HIS40 3.1 21.1 1.0 CB B:CYS78 3.2 18.1 1.0 CB B:HIS81 3.4 19.4 1.0 CE B:MET86 3.5 20.1 1.0 CB B:HIS40 3.5 20.0 1.0 CA B:HIS40 3.7 19.6 1.0 CG B:MET86 3.9 20.4 1.0 NE2 B:HIS81 4.2 19.9 1.0 NE2 B:HIS40 4.2 22.6 1.0 CD2 B:HIS81 4.2 19.8 1.0 CD2 B:HIS40 4.3 22.1 1.0 O B:GLY39 4.3 19.6 1.0 CB B:MET86 4.4 21.0 1.0 N B:HIS40 4.6 19.8 1.0 CA B:CYS78 4.6 18.3 1.0 N B:HIS81 4.7 19.3 1.0 CA B:HIS81 4.7 19.9 1.0 C B:GLY39 4.7 19.8 1.0 N B:ASN41 4.7 18.9 1.0 CG B:PRO80 4.7 19.4 1.0 C B:HIS40 4.8 19.4 1.0 O B:ALA15 4.9 35.8 1.0

S.Tamaoki, T.Yamaguchi, T.Kohzuma. X-Ray Crystal Structure of Pseudoazurin MET16GLY Variant To Be Published.