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Copper in the structure of Coriolopsis Gallica Laccase T2 Copper Depleted (pdb 2ve0)

The binding sites of Copper atom in the structure of Coriolopsis Gallica Laccase T2 Copper Depleted (pdb code 2ve0). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 2ve0 structure was solved by E.DE LA MORA, B. VALDERRAMA, E.HORJALES, E.RUDINO-PINERA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)34.5-2.3
Space groupP212121
a (A)56.285
b (A)85.827
c (A)151.743
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)23
Rfree (%)26.6

Copper Binding Sites:

Copper binding site 1 out of 3 in 2ve0


Copper binding site 1 out of 3 in 2ve0
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stereopicture of Copper binding site 1 out of 3 in 2ve0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 2ve0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Ala388, A: Pro390, A: His391, A: Pro392, A: Cys447, A: Ile449, A: His452, A: Phe457,

conact list:


AtomAtomDistance (A)
CuO A:Ala3883.92
CuC A:Ala3884.74
CuCB A:Ala3884.96
CuO A:Pro3904.59
CuC A:Pro3904.94
CuNE2 A:His3913.90
CuN A:His3914.66
CuCB A:His3913.63
CuND1 A:His3911.92
CuCD2 A:His3914.10
CuC A:His3914.84
CuCE1 A:His3912.71
CuCG A:His3913.09
CuCA A:His3913.82
CuN A:Pro3924.95
CuCD A:Pro3924.31
CuCB A:Cys4474.55
CuSG A:Cys4472.93
CuN A:Ile4494.80
CuCB A:Ile4493.38
CuCD1 A:Ile4492.81
CuCG2 A:Ile4494.16
CuCG1 A:Ile4493.25
CuCA A:Ile4494.64
CuNE2 A:His4524.39
CuCB A:His4524.23
CuND1 A:His4522.51
CuCD2 A:His4524.69
CuCE1 A:His4523.14
CuCG A:His4523.71
CuCD1 A:Phe4574.71
CuCE1 A:Phe4574.87

interactive model:


Copper binding site 2 out of 3 in 2ve0


Copper binding site 2 out of 3 in 2ve0
Click to enlarge
stereopicture of Copper binding site 2 out of 3 in 2ve0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 2ve0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His64, A: His109, A: His111, A: His394, A: His396, A: Phe444, A: His446, A: His448, A: Cu11496, A: Hoh2110,

conact list:


AtomAtomDistance (A)
CuND1 A:His644.53
CuCE1 A:His644.65
CuCE1 A:His1094.97
CuNE2 A:His1112.16
CuND1 A:His1114.21
CuCD2 A:His1113.23
CuCE1 A:His1113.05
CuCG A:His1114.33
CuND1 A:His3943.74
CuCE1 A:His3944.33
CuCG A:His3944.89
CuNE2 A:His3962.35
CuND1 A:His3964.27
CuCD2 A:His3963.53
CuCE1 A:His3963.04
CuCG A:His3964.54
CuCB A:Phe4444.86
CuCD2 A:Phe4444.60
CuNE2 A:His4462.06
CuND1 A:His4463.85
CuCD2 A:His4463.31
CuCE1 A:His4462.60
CuCG A:His4464.20
CuNE2 A:His4484.47
CuCD2 A:His4484.39
CuCU A:Cu114964.15
CuO A:Hoh21104.92

interactive model:


Copper binding site 3 out of 3 in 2ve0


Copper binding site 3 out of 3 in 2ve0
Click to enlarge
stereopicture of Copper binding site 3 out of 3 in 2ve0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 2ve0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His64, A: His66, A: Trp107, A: His109, A: His111, A: Ala240, A: His394, A: His448, A: Cu11495,

conact list:


AtomAtomDistance (A)
CuNE2 A:His644.78
CuND1 A:His643.21
CuCE1 A:His643.47
CuCG A:His644.53
CuNE2 A:His664.18
CuCB A:His663.81
CuND1 A:His662.21
CuCD2 A:His664.36
CuCE1 A:His662.99
CuCG A:His663.34
CuCA A:His664.92
CuCZ2 A:Trp1074.03
CuCE2 A:Trp1074.43
CuNE1 A:Trp1074.56
CuCH2 A:Trp1074.70
CuNE2 A:His1092.42
CuND1 A:His1094.27
CuCD2 A:His1093.57
CuCE1 A:His1093.07
CuCG A:His1094.54
CuNE2 A:His1114.89
CuCD2 A:His1114.74
CuCB A:Ala2404.46
CuNE2 A:His3944.91
CuND1 A:His3943.84
CuCE1 A:His3943.93
CuCG A:His3944.82
CuNE2 A:His4482.37
CuND1 A:His4484.49
CuCD2 A:His4483.26
CuCE1 A:His4483.41
CuCG A:His4484.46
CuCU A:Cu114954.15

interactive model:




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