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Copper in the structure of Structure Of the N90S Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans (pdb 2jl0)

The binding sites of Copper atom in the structure of Structure Of the N90S Mutant of Nitrite Reductase From Alcaligenes Xylosoxidans (pdb code 2jl0). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 2jl0 structure was solved by M.A.HOUGH, R.R.EADY, S.S.HASNAIN, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)95.8-1.6
Space groupH3
a (A)89.552
b (A)89.552
c (A)287.678
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)19.2
Rfree (%)22.2

Copper Binding Sites:

Copper binding site 1 out of 4 in 2jl0


Copper binding site 1 out of 4 in 2jl0
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stereopicture of Copper binding site 1 out of 4 in 2jl0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 2jl0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Met56, A: Pro88, A: His89, A: Ser90, A: Cys130, A: Pro132, A: His139, A: Met144,

conact list:


AtomAtomDistance (A)
CuSD A:Met564.43
CuO A:Pro884.09
CuC A:Pro884.86
CuNE2 A:His894.18
CuN A:His894.85
CuCB A:His893.55
CuND1 A:His892.12
CuCD2 A:His894.27
CuC A:His894.94
CuCE1 A:His893.02
CuCG A:His893.18
CuCA A:His893.90
CuN A:Ser904.76
CuCB A:Cys1303.10
CuSG A:Cys1302.24
CuCA A:Cys1304.52
CuCD A:Pro1324.42
CuCG A:Pro1324.15
CuNE2 A:His1394.25
CuCB A:His1393.46
CuND1 A:His1392.17
CuCD2 A:His1394.28
CuCE1 A:His1393.13
CuCG A:His1393.15
CuCA A:His1394.64
CuCB A:Met1444.58
CuCE A:Met1443.64
CuCG A:Met1444.05
CuSD A:Met1442.61

interactive model:


Copper binding site 2 out of 4 in 2jl0


Copper binding site 2 out of 4 in 2jl0
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stereopicture of Copper binding site 2 out of 4 in 2jl0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 2jl0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp92, A: His94, A: His129, A: Hoh2112, A: Hoh2114,

conact list:


AtomAtomDistance (A)
CuOD2 A:Asp923.71
CuOD1 A:Asp924.53
CuCG A:Asp924.27
CuNE2 A:His942.06
CuND1 A:His944.11
CuCD2 A:His943.15
CuCE1 A:His942.95
CuCG A:His944.24
CuNE2 A:His1292.01
CuND1 A:His1294.13
CuCD2 A:His1292.97
CuCE1 A:His1293.03
CuCG A:His1294.13
CuO A:Hoh21121.94
CuO A:Hoh21144.97

interactive model:


Copper binding site 3 out of 4 in 2jl0


Copper binding site 3 out of 4 in 2jl0
Click to enlarge
stereopicture of Copper binding site 3 out of 4 in 2jl0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 2jl0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Met56, C: Pro88, C: His89, C: Ser90, C: Cys130, C: Pro132, C: His139, C: Met144,

conact list:


AtomAtomDistance (A)
CuSD C:Met564.36
CuO C:Pro884.08
CuC C:Pro884.81
CuNE2 C:His894.15
CuN C:His894.77
CuCB C:His893.48
CuND1 C:His892.08
CuCD2 C:His894.22
CuC C:His894.82
CuCE1 C:His893.01
CuCG C:His893.12
CuCA C:His893.78
CuN C:Ser904.75
CuCB C:Cys1303.10
CuSG C:Cys1302.10
CuCA C:Cys1304.52
CuCD C:Pro1324.38
CuCG C:Pro1323.88
CuNE2 C:His1394.12
CuCB C:His1393.51
CuND1 C:His1392.06
CuCD2 C:His1394.21
CuCE1 C:His1392.97
CuCG C:His1393.12
CuCA C:His1394.67
CuCB C:Met1444.57
CuCE C:Met1443.55
CuCG C:Met1444.10
CuSD C:Met1442.62

interactive model:


Copper binding site 4 out of 4 in 2jl0


Copper binding site 4 out of 4 in 2jl0
Click to enlarge
stereopicture of Copper binding site 4 out of 4 in 2jl0
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Copper in the PDB 2jl0. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: C: Asp92, C: His94, C: His129, C: Hoh2103, C: Hoh2105,

conact list:


AtomAtomDistance (A)
CuOD2 C:Asp923.69
CuOD1 C:Asp924.56
CuCG C:Asp924.25
CuNE2 C:His942.08
CuND1 C:His944.13
CuCD2 C:His943.15
CuCE1 C:His942.97
CuCG C:His944.25
CuNE2 C:His1292.07
CuND1 C:His1294.16
CuCD2 C:His1293.07
CuCE1 C:His1293.03
CuCG C:His1294.20
CuO C:Hoh21034.91
CuO C:Hoh21052.23

interactive model:




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