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Copper in the structure of Crystal Structure Of The Periplasmic Divalent Cation Tolerance Protein Cuta From Pyrococcus Horikoshii OT3 in the Presence of CUCL2 (pdb 1v99)

The binding sites of Copper atom in the structure of Crystal Structure Of The Periplasmic Divalent Cation Tolerance Protein Cuta From Pyrococcus Horikoshii OT3 in the Presence of CUCL2 (pdb code 1v99). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 1v99 structure was solved by B.BAGAUTDINOV, T.H.TAHIROV, RIKEN STRUCTURAL GENOMICS/PROTEOMICSINITIATIVE (RSGI), with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)36.1-1.8
Space groupP212121
a (A)93.085
b (A)124.250
c (A)50.458
alpha (°)90.00
beta (°)90.00
gamma (°)90.00
Rfactor (%)18.9
Rfree (%)22.5

Copper Binding Sites:

Copper binding site 1 out of 2 in 1v99


Copper binding site 1 out of 2 in 1v99
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stereopicture of Copper binding site 1 out of 2 in 1v99
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1v99. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Asp84, A: Asp86, B: Asp84, B: Asp86, C: Asp84, C: Asp86, A: Hoh4015, A: Hoh4043, B: Hoh4015, B: Hoh4021, B: Hoh4031, C: Hoh4016, C: Hoh4035,

conact list:


AtomAtomDistance (A)
CuO A:Asp844.30
CuOD2 A:Asp864.08
CuOD1 A:Asp864.33
CuCG A:Asp864.63
CuO B:Asp844.59
CuOD2 B:Asp864.06
CuOD1 B:Asp864.31
CuCG B:Asp864.62
CuO C:Asp844.50
CuOD2 C:Asp864.35
CuOD1 C:Asp864.45
CuCG C:Asp864.84
CuO A:Hoh40152.20
CuO A:Hoh40432.48
CuO B:Hoh40152.21
CuO B:Hoh40212.29
CuO B:Hoh40314.00
CuO C:Hoh40162.31
CuO C:Hoh40352.49

interactive model:


Copper binding site 2 out of 2 in 1v99


Copper binding site 2 out of 2 in 1v99
Click to enlarge
stereopicture of Copper binding site 2 out of 2 in 1v99
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1v99. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: D: Asp84, D: Asp86, E: Asp84, E: Asp86, F: Asp84, F: Asp86, D: Hoh4047, D: Hoh4051, E: Hoh4011, E: Hoh4041, E: Hoh4114, F: Hoh2009, F: Hoh2022, F: Hoh2059, F: Hoh2078,

conact list:


AtomAtomDistance (A)
CuO D:Asp844.53
CuOD2 D:Asp864.15
CuOD1 D:Asp864.48
CuCG D:Asp864.76
CuO E:Asp844.39
CuOD2 E:Asp864.17
CuOD1 E:Asp864.44
CuCG E:Asp864.75
CuO F:Asp844.49
CuOD2 F:Asp864.08
CuOD1 F:Asp864.40
CuCG F:Asp864.68
CuO D:Hoh40472.36
CuO D:Hoh40512.38
CuO E:Hoh40112.32
CuO E:Hoh40412.44
CuO E:Hoh41143.58
CuO F:Hoh20092.31
CuO F:Hoh20224.68
CuO F:Hoh20593.94
CuO F:Hoh20782.42

interactive model:




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