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Copper in the structure of Bacillus Subtilis Cota Laccase Adduct With Abts (pdb 1uvw)

The binding sites of Copper atom in the structure of Bacillus Subtilis Cota Laccase Adduct With Abts (pdb code 1uvw). This binding sites where shown with 5.0 Angstroms radius around Copper atom.
The 1uvw structure was solved by F.J.ENGUITA, D.MARCAL, R.GRENHA, L.O.MARTINS, A.O.HENRIQUES, M.A.CARRONDO, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A)20.0-2.5
Space groupP3121
a (A)102.278
b (A)102.278
c (A)136.247
alpha (°)90.00
beta (°)90.00
gamma (°)120.00
Rfactor (%)11.5
Rfree (%)14.6

Copper Binding Sites:

Copper binding site 1 out of 4 in 1uvw


Copper binding site 1 out of 4 in 1uvw
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stereopicture of Copper binding site 1 out of 4 in 1uvw
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Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Copper in the PDB 1uvw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Leu386, A: His419, A: Pro420, A: Cys492, A: Ile494, A: His497, A: Met502,

conact list:


AtomAtomDistance (A)
CuCD1 A:Leu3864.67
CuNE2 A:His4194.01
CuCB A:His4193.82
CuND1 A:His4192.11
CuCD2 A:His4194.25
CuCE1 A:His4192.82
CuCG A:His4193.28
CuCA A:His4194.33
CuCD A:Pro4204.78
CuCB A:Cys4923.27
CuSG A:Cys4922.11
CuCA A:Cys4924.64
CuN A:Ile4944.98
CuCB A:Ile4944.05
CuCD1 A:Ile4943.96
CuCG2 A:Ile4944.75
CuCG1 A:Ile4944.37
CuNE2 A:His4974.13
CuCB A:His4973.50
CuND1 A:His4972.23
CuCD2 A:His4974.18
CuCE1 A:His4973.08
CuCG A:His4973.15
CuCE A:Met5024.09
CuCG A:Met5024.67
CuSD A:Met5023.23

interactive model:


Copper binding site 2 out of 4 in 1uvw


Copper binding site 2 out of 4 in 1uvw
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stereopicture of Copper binding site 2 out of 4 in 1uvw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Copper in the PDB 1uvw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His105, A: His107, A: Trp151, A: His153, A: Ala297, A: His422, A: His493, A: Cu11513, A: Cu11514, A: Oxy1515,

conact list:


AtomAtomDistance (A)
CuNE2 A:His1054.39
CuCD2 A:His1053.92
CuNE2 A:His1074.10
CuCB A:His1073.44
CuND1 A:His1072.02
CuCD2 A:His1074.17
CuCE1 A:His1072.96
CuCG A:His1073.07
CuCA A:His1074.56
CuCZ2 A:Trp1513.99
CuCE2 A:Trp1514.27
CuNE1 A:Trp1514.30
CuCH2 A:Trp1514.75
CuNE2 A:His1532.32
CuND1 A:His1534.34
CuCD2 A:His1533.30
CuCE1 A:His1533.23
CuCG A:His1534.41
CuCB A:Ala2974.52
CuNE2 A:His4224.75
CuCD2 A:His4224.87
CuNE2 A:His4932.25
CuND1 A:His4934.32
CuCD2 A:His4933.22
CuCE1 A:His4933.20
CuCG A:His4934.35
CuCU A:Cu115134.56
CuCU A:Cu115144.07
CuO1 A:Oxy15154.32
CuO2 A:Oxy15153.25

interactive model:


Copper binding site 3 out of 4 in 1uvw


Copper binding site 3 out of 4 in 1uvw
Click to enlarge
stereopicture of Copper binding site 3 out of 4 in 1uvw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Copper in the PDB 1uvw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His105, A: His155, A: His422, A: His424, A: Val489, A: His491, A: His493, A: Glu498, A: Cu11512, A: Cu11514, A: Oxy1515, A: Hoh2080,

conact list:


AtomAtomDistance (A)
CuNE2 A:His1053.92
CuCD2 A:His1053.86
CuCE1 A:His1054.77
CuCG A:His1054.73
CuNE2 A:His1552.42
CuND1 A:His1554.52
CuCD2 A:His1553.16
CuCE1 A:His1553.51
CuCG A:His1554.38
CuNE2 A:His4223.96
CuCD2 A:His4223.54
CuCG A:His4224.78
CuNE2 A:His4242.19
CuND1 A:His4244.20
CuCD2 A:His4243.28
CuCE1 A:His4243.03
CuCG A:His4244.34
CuCG2 A:Val4894.19
CuNE2 A:His4912.13
CuND1 A:His4914.07
CuCD2 A:His4913.07
CuCE1 A:His4913.02
CuCG A:His4914.13
CuNE2 A:His4934.83
CuCD2 A:His4934.86
CuOE2 A:Glu4984.80
CuCU A:Cu115124.56
CuCU A:Cu115143.83
CuO1 A:Oxy15153.82
CuO2 A:Oxy15153.30
CuO A:Hoh20804.72

interactive model:


Copper binding site 4 out of 4 in 1uvw


Copper binding site 4 out of 4 in 1uvw
Click to enlarge
stereopicture of Copper binding site 4 out of 4 in 1uvw
Click to enlarge
Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Copper in the PDB 1uvw. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Copper atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: His105, A: Leu106, A: His107, A: Gly108, A: His422, A: His424, A: Cu11512, A: Cu11513, A: Hoh2070, A: Hoh2071, A: Hoh2220,

conact list:


AtomAtomDistance (A)
CuNE2 A:His1052.01
CuND1 A:His1054.08
CuCD2 A:His1053.05
CuCE1 A:His1052.95
CuCG A:His1054.16
CuO A:Leu1064.97
CuNE2 A:His1074.06
CuN A:His1074.60
CuCB A:His1073.88
CuND1 A:His1073.42
CuCD2 A:His1073.86
CuC A:His1074.44
CuCE1 A:His1073.79
CuCG A:His1073.44
CuCA A:His1073.63
CuN A:Gly1084.16
CuNE2 A:His4221.95
CuND1 A:His4223.85
CuCD2 A:His4223.05
CuCE1 A:His4222.71
CuCG A:His4224.04
CuNE2 A:His4243.10
CuCB A:His4244.76
CuND1 A:His4244.32
CuCD2 A:His4242.98
CuCE1 A:His4243.94
CuCG A:His4243.87
CuCA A:His4244.63
CuCU A:Cu115124.07
CuCU A:Cu115133.83
CuO A:Hoh20702.65
CuO A:Hoh20714.66
CuO A:Hoh22204.79

interactive model:




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